Welcome

With the rapid generation of peta-scale genomic data, there is a growing demand for highly scalable analytic tools to speed up the data processing/mining algorithms for more bio/medical applications. This is especially true when the cost of sequencing itself is decreasing and the cost of the data analysis will be dominant in future.

The Workshop on Large Genome Analytics aims at bring you the recent development on large scale genome analysis methods/techniques/tools. Examples of the topics of the workshop includes: Genome Assembly, mapping, ect.

Tentative Agenda

Mar 31 2017 /   Room 1018, Building F
TimeSpeakerTitle
9:00-9:05 Shengzhong Feng
Shenzhen Institutes of Advanced Technology,Chinese Academy of Sciences
冯圣中
中国科学院深圳先进技术研究院
Welcome message
9:05-9:30 Yanjie Wei
Shenzhen Institutes of Advanced Technology,Chinese Academy of Sciences
魏彦杰
中国科学院深圳先进技术研究院
Overview of Extreme Scale Genomics Analysis
9:30-10:00 Pavan Balaji
Argonne National Laboratory, USA
美国阿贡实验室
Bloomfish: A Highly Scalable Distributed Kmer Counting Framework
10:00-10:30 Beifang Niu
Computer Network Information Center, Chinese Academy of Sciences
牛北方
中国科学院计算机网络信息中心
Gclust: Fast microbial genome sized sequence clustering using suffix array algorithm
10:40-11:10 Shoaling Peng
National University of Defense Technology
彭绍亮
国防科技大学
High performance computational biology and drug design on TianHe Supercomputers
11:10-11:40 Xiaodong Fang
BGI
方晓东
华大基因
Call for collaborations: Practical bioinformatics problems
11:40-12:10 Ming Zhao
Rinjin Hospital
赵明
瑞金医院
Challenges in Cancer Whole Genome Sequencing and Clonal Architecture Analysis
Afternoon
2:15-3:00 Xiaoming Zhu
National SUPERCOMPUTER CENTER IN JINAN
朱效民
国家超级计算济南中心
Discussion about Overview of S3 Series of Sunway SuperComputers
3:00-3:45 Beifang Niu
Computer Network Information Center, Chinese Academy of Sciences
牛北方
中国科学院计算机网络信息中心
Discussion about Bioinformatics Algorithms for Exascale
4:00-4:45 Ming Zhao
Rinjin Hospital
赵明
瑞金医院
Discussion about Efficient Pipeline for Medical Bioinformatics
Apr 1 2017/  Room 1018, Building F
9:15-9:45 Guangming Tan
Institute of Computing Technology, Chinese Academy of Sciences
谭光明
中科院计算技术研究所
Make Sense of Performance in Datacenter Scale Genomics Analytics Applications
9:45-10:15 Weiguo Liu
Shandong University
刘卫国
山东大学
Large-Scale Biological Sequence Analysis on Heterogeneous Computing Platforms
10:30-11:00 Bingqiang Wang
Sun Yat-sen University
王丙强
中山大学
Standard and Non-Standard Genome Analysis—about pipelines and populations
11:00-11:30 Yong Zhang
BGI
张勇
华大基因
Gaea–a Hadoop-based Pipeline for Resequencing Data Analysis
11:30-12:00 Jintao Meng
Tencent
孟金涛
腾讯计算机系统有限公司
Scalable Assembly for Massive Genomic Graphs

Location

Dates

Mar 31 , 2017
Apr 1 , 2017

Location

Shenzhen Insitutes of Advanced Technology, CAS Shenzhen, China

Honarary Chair

Shengzhong Feng

Chairs

Yanjie Wei
Bingqiang Wang

Organizer

中国科学院深圳先进技术研究院 粤ICP备09184136号-3

地址:深圳市南山区西丽深圳大学城学苑大道1068号

邮编:518055 联系电子邮箱:cx.zeng@siat.ac.cn