Welcome

With the rapid generation of peta-scale genomic data, there is a growing demand for highly scalable analytic tools to speed up the data processing/mining algorithms for more bio/medical applications. This is especially true when the cost of sequencing itself is decreasing and the cost of the data analysis will be dominant in future.

The Workshop on Large Genome Analytics aims at bring you the recent development on large scale genome analysis methods/techniques/tools. Examples of the topics of the workshop includes: Genome Assembly, mapping, ect.

Tentative Agenda

Mar 31 2017 /   Room 1018, Building F
Time	Speaker	Title
9:00-9:05	Shengzhong Feng Shenzhen Institutes of Advanced Technology，Chinese Academy of Sciences 冯圣中 中国科学院深圳先进技术研究院	Welcome message
9:05-9:30	Yanjie Wei Shenzhen Institutes of Advanced Technology，Chinese Academy of Sciences 魏彦杰 中国科学院深圳先进技术研究院	Overview of Extreme Scale Genomics Analysis
9:30-10:00	Pavan Balaji Argonne National Laboratory, USA 美国阿贡实验室	Bloomfish: A Highly Scalable Distributed Kmer Counting Framework
10:00-10:30	Beifang Niu Computer Network Information Center, Chinese Academy of Sciences 牛北方 中国科学院计算机网络信息中心	Gclust: Fast microbial genome sized sequence clustering using suffix array algorithm
10:40-11:10	Shoaling Peng National University of Defense Technology 彭绍亮 国防科技大学	High performance computational biology and drug design on TianHe Supercomputers
11:10-11:40	Xiaodong Fang BGI 方晓东 华大基因	Call for collaborations: Practical bioinformatics problems
11:40-12:10	Ming Zhao Rinjin Hospital 赵明 瑞金医院	Challenges in Cancer Whole Genome Sequencing and Clonal Architecture Analysis
Afternoon
2:15-3:00	Xiaoming Zhu National SUPERCOMPUTER CENTER IN JINAN 朱效民 国家超级计算济南中心	Discussion about Overview of S3 Series of Sunway SuperComputers
3:00-3:45	Beifang Niu Computer Network Information Center, Chinese Academy of Sciences 牛北方 中国科学院计算机网络信息中心	Discussion about Bioinformatics Algorithms for Exascale
4:00-4:45	Ming Zhao Rinjin Hospital 赵明 瑞金医院	Discussion about Efficient Pipeline for Medical Bioinformatics
Apr 1 2017/  Room 1018, Building F
9:15-9:45	Guangming Tan Institute of Computing Technology, Chinese Academy of Sciences 谭光明 中科院计算技术研究所	Make Sense of Performance in Datacenter Scale Genomics Analytics Applications
9:45-10:15	Weiguo Liu Shandong University 刘卫国 山东大学	Large-Scale Biological Sequence Analysis on Heterogeneous Computing Platforms
10:30-11:00	Bingqiang Wang Sun Yat-sen University 王丙强 中山大学	Standard and Non-Standard Genome Analysis—about pipelines and populations
11:00-11:30	Yong Zhang BGI 张勇 华大基因	Gaea–a Hadoop-based Pipeline for Resequencing Data Analysis
11:30-12:00	Jintao Meng Tencent 孟金涛 腾讯计算机系统有限公司	Scalable Assembly for Massive Genomic Graphs

Location

Dates

Mar 31 , 2017
Apr 1 , 2017

Location

Shenzhen Insitutes of Advanced Technology, CAS Shenzhen, China

Honarary Chair

Shengzhong Feng

Chairs

Yanjie Wei
Bingqiang Wang

Organizer